rs51784980 SNP Detail

Summary

• ID
  rs51784980
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52541241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGCAGGTGGT TAAAAGCATA TTAGGGAAAC TGTTCTCATA
  AGCAAATTAC ATACCCATTA ACACGAACCA TTAAAAAATG AACTACGGAA ATAAGTACAG
  T
  GATATTTATA TGTCTTTCAT GCCTGATAAA GCCTGTTTGC TGGTGGGACA GACAGCCCAG
  CAAGCCGCAG CTGAGCCTCC GTGCAGGTGC CACGCCCAGG A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135177610	ENSMUSSNP2764847	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs51784980					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52541241 () rs orientation: forward

Symbol	Name	Function Class
Rr367437	regulatory region 367437	568 bp upstream
Rr576555	regulatory region 576555	1018 bp distal
Rr576556	regulatory region 576556	542 bp proximal
Tssr33260	transcription start site region 33260	626 bp downstream
Tssr33261	transcription start site region 33261	664 bp downstream