rs51784199 SNP Detail

Summary

• ID
  rs51784199
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCTCAA AGCCCTGGAC
  TCAGTTCTCA GCACTGCCTA ACTGAGTGTG GTGCCCCATG CCTGTCATCC CTGCACTCCA
  AAAGGGCAGG CAGGAAGATT AGGAGTTTAG GGTCATCCTT GGCTATAAAA TGAGTTTGAA
  GCTAGCCTGG GCTACATTAA ACCCTGCCTC AAAGTAACCA GAAACCTAAG ACTTCCGTTC
  M
  GTATCTAGAC TAGAGAGGGT GGTGTTGGTT ACCGCCTTGT GTAATTAGGG AGGGCTGGGA
  CCTCGTGGAG CCTCTGGCGT CCTGTCCACC CCTACAGGCA AAGCCAGCGC CATGTTCCAC
  TCAGTGGCTA GCTAGTTTGT GGTAAAGTAA GAAAAGCCAG CAGGCTGTCC TGTGGAGCAA
  AGCTTAAACC AGAAACAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147543346	ENSMUSSNP485792	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51784199					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1155 bp distal
Rr398589	regulatory region 398589	1587 bp downstream
Rr601975	regulatory region 601975	1975 bp distal
Rr601979	regulatory region 601979	1965 bp distal
Rr601980	regulatory region 601980	1474 bp distal
Rr601981	regulatory region 601981	1649 bp distal
Rr601982	regulatory region 601982	within coordinates
Tssr43976	transcription start site region 43976	1986 bp upstream
Tssr43977	transcription start site region 43977	1959 bp upstream