rs51782596 SNP Detail

Summary

• ID
  rs51782596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:96458006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGTTT AGAGACAAGA
  GGCAGGCACT GCAGAGGCAG GCACTACAGA GTTGGTAAAA ACTATTCATA TGCATTGGAG
  GAGCTTAGCC TGCCACCAGG ATTCCAAGGT TCCAGTTAAA TCTGTTTGGA GAAATCGCAG
  AGAACTGCGA AGGATGCGGT ATTTGACCGT TTGAGGGCTC AGAGAGGCAC TAGAGAACAG
  R
  CACTTGAGCC ATACGTCAGA CGGTGTGGGG CAAGCTATGG ATGACCAGAG ACAAGTGACA
  TCCTCCAACC ACCGTGTTCT TCTCTCACTT CACACGCTTC TGCTGCCCAA CTGTGAGTAA
  GAATCAGCTG TCTTCAAGTT TTGTCTTGAG ACAGTCTCGT TACGTAGACC AGGCTGGCCT
  AGAACTTCCA GACACCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135516758	ENSMUSSNP3901661	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320842038	CHEV_3_96354613	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51782596					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96458006 () rs orientation: forward

Symbol	Name	Function Class
Rr581316	regulatory region 581316	953 bp distal
Rr581317	regulatory region 581317	460 bp proximal