rs51781320 SNP Detail

Summary

• ID
  rs51781320
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90616793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTG CCCAGGAAAA AGTCAATAAT
  M
  TCAGATTCCC TGATGGTCAG GAAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135478746	ENSMUSSNP4092623	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320838624	CHEV_3_90513408	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51781320					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90616793 () rs orientation: forward

Symbol	Name	Function Class
Gm42579	predicted gene 42579	within coordinates
Rr580435	regulatory region 580435	645 bp distal
Rr580436	regulatory region 580436	716 bp distal
Rr580437	regulatory region 580437	223 bp proximal
Rr580438	regulatory region 580438	482 bp proximal
Rr580439	regulatory region 580439	743 bp proximal