rs51775629 SNP Detail

Summary

• ID
  rs51775629
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150277937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTAAAA TAAACAAATA
  AAGTGACTTC CAGAACCTAG AGAGATGGCT CAGTGGTTAA GAGCATATAA TACCCTGAGT
  AGTGGTGGCA CATGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGACAGGTG GATTTCTGAG
  TTCAAGGCCA GCCTGGTCTA CAGAGAGAGT TCCAGAACAG CCAGGGCTAC ACAGAGAAAC
  M
  CTGTCTCAAA AAATAAAAAA ATAAAGACAA ACACCATACA CCTTAATGAC TTAAAAATCC
  ATACTTAGGA GCTGGAGAGA GGACAGTGCA CAAGAACTTA TGCATGGTTT CTCAGAGGTA
  TGCTTCCCTC CTAAGCCGTA GAAGAAAGAG TCAAAGAGAC CTGGCTTCCC TCGGGAGGGC
  TGCAGCTTCC ATACGCACGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148049897	ENSMUSSNP4568554	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51775629					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150277937 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			542 bp proximal
Rr605220	regulatory region 605220			632 bp proximal
Tssr44724	transcription start site region 44724			964 bp upstream
Tssr44725	transcription start site region 44725			922 bp upstream
Tssr44726	transcription start site region 44726			895 bp upstream
Tssr44727	transcription start site region 44727			847 bp upstream
Tssr44728	transcription start site region 44728			278 bp downstream