rs51770569 SNP Detail

Summary

• ID
  rs51770569
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141233715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGAGAA ACCCTGTCTA
  GGAAAACCAA AAAAAAAAAA AAAAAAAAAT CCACACTCCA TCAAGCACAG ATTTACCATA
  ACCTGTTTCA ATTACTTTCA ACCTAACCAA AACCAACCCT GGCACAGTCC AAGGGAAAGA
  ACAGAAAGCC TGGCAAGGCT AAAAGCAGCT CCAGGGAGCT CTGGTCACCT GCTCGATGGA
  G
  AAGGCAGAGA CAGGAGGACG GTGGACTACA GCAGAGGCGG AGGACAAGAG GACTTATGAC
  AGCAGCCGGC CAGCGGCCCC GCCTCTGGGC TTGGTGGACA CCGCCCCCAA GAGCACACCC
  ATGCTACCAG GCTGGACAGT CCCAGCAGCA GTTTCTGCCC ACTGCACCCA GCAACGCCAC
  AAACAAGGCA AAGGCTGGCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147739678	ENSMUSSNP656406	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321387737	CHEV_4_141062319	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51770569					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141233715 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1607 bp distal
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			706 bp proximal
Rr603783	regulatory region 603783			979 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant