rs51768594 SNP Detail

Summary

• ID
  rs51768594
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTGGTG GGGCATGTAC
  AGTTGCTCTG AGCCGTGCAA AAGCGGGTCG CCATCGCCAG CAGTAGCAGT AGCAGCGGTG
  CTAGATCCAA GCCCCTCGCC ATGGTGGGGT GGAGTAGAAT GGACCTCCAA CTACAGACCA
  GAGGCAGGGA TTCTGAAGGA TCAGGCTGGG TAGGACACTG CAGGCGACTC CTGCCGGGCT
  K
  TTCCCTCCAG CTCTTATAAG CTCCTGTACC TGTAGGACTG GTTAGCTAGT GACTCACTCA
  ATGGAATTTG GGTGGCGCTC CCTATTCCCA GGTCCCGCGG AAGAAGCCGG CAGCCCTGAG
  CTGCCTGAGA TAGAATCAGG CAGGGGAGAT TGCTCCTGCC ATCTGCTGAC CAAAACCCCA
  TAGAGGAAAC CAGTACTTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894259	NES15959608	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G		G	T	G		T
ss321812332	CHEV_6_67485799	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51768594					SNP	T	T	T	T	T	T	T	T	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894259	NES15959608	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	993 bp distal
Rr631669	regulatory region 631669	550 bp distal
Rr631670	regulatory region 631670	within coordinates
Rr631671	regulatory region 631671	within coordinates
Rr631672	regulatory region 631672	153 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1871	transcription start site region 1871	1987 bp downstream
Tssr1872	transcription start site region 1872	1024 bp upstream
Tssr61255	transcription start site region 61255	1060 bp upstream
Tssr61256	transcription start site region 61256	579 bp upstream
Tssr61257	transcription start site region 61257	108 bp upstream
Tssr61258	transcription start site region 61258	3 bp upstream
Tssr61259	transcription start site region 61259	23 bp downstream