rs51766439 SNP Detail

Summary

• ID
  rs51766439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51906389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTTTTA ACTAGGATTC
  AAATATAAGC GTCATGTATA ATAACAGTGT TCTTCCACTG TTACATAAAC ACAAGCGATG
  ACACCCCCTT CCATTCCTTA GACATCTTGA CAATCCGAGC TAATACAGCT AATTCGACTC
  AAGTCCCTGA AAACACGGAA CTACAATTGC CACTTATCAA GTGGCTGAGC CATTAAACTC
  R
  CCCCTGACAC TCAGTCTCTA GGGCTTCCAC GGTGACAACA TCCAATCGTT GGATTGTGGT
  GAGTCACAGT CGCTAGTTTT TAAACTTCTG TGTACTCAAC ATTCAACATA ATACTTTACT
  TTGTCTTATA GTGACAGTTG CTTAGTTACC AATTCTTTAT AAATGCAAAC TGATTTATCA
  AGATTTTTCA AGAGGTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411395	NES15908734	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A		G	A	A	G
ss135174844	ENSMUSSNP6178885	ENSEMBL	ENSEMBL_Sanger	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51766439					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411395	NES15908734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51906389 () rs orientation: forward

Symbol	Name	Function Class
D3Wsu174e	DNA segment, Chr 3, Wayne State University 174, expressed	1897 bp proximal
Gm37465	predicted gene, 37465	1768 bp downstream
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr397662	regulatory region 397662	990 bp upstream
Rr576433	regulatory region 576433	within coordinates
Rr576434	regulatory region 576434	1099 bp proximal