rs51765677 SNP Detail

Summary

• ID
  rs51765677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172318408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG ACATGATCTC TACGGGGGTG
  R
  GGGTGGGGTG AGGGGGTGAG TACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120014512	PARCsnp_1.09881	PARC_SEQ	INBRED	f	SNP			A	G
ss146193619	ENSMUSSNP4896186	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320125705	CHEV_1_174420972	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs51765677					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172318408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			136 bp distal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			1705 bp distal
Rr423588	regulatory region 423588			1133 bp distal
Rr423589	regulatory region 423589			253 bp distal
Rr423590	regulatory region 423590			74 bp distal
Tssr10205	transcription start site region 10205			1339 bp upstream