rs51756623 SNP Detail

Summary

• ID
  rs51756623
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141293629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGATCTC ATTTTCAAAA
  AAAAAAAAAA TGTTCCCCTC CATTGCCCTT CCCCATAGTC TAAATCTTTG CTTGTTTGTT
  CTGCTTTTTT TGCCCCCTGC ATCTGGGAGA GGAAACGTAC CTAAGCATAC ACATGTGTGC
  AAACACACAG ACACAGCAGA TCCATTCACA GGCAGGTGTA TATAGAAAAC CAATTATAAA
  M
  AGAACAATGC ATTAACATGC ACACTATAGA GCAAAATTCA TTCTCTCTGG AATATTTGCT
  CATTGAGATA CAAGGAGTTT ATCTTTGGCA CAGTGGGCCT CAACTAATTG AGATGTTATT
  TTTCAAAAGT CGGCTGCAAA GATTGAGGGA GAGGATGCTG TTGCAAAATT GCCAGGTCTC
  AGGAAAGCTT TCTTTAGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61092041	NES16588670	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51756623					SNP	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092041	NES16588670	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141293629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			1564 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant