rs51754073 SNP Detail

Summary

• ID
  rs51754073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119669927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGAAT TCCTGACAGC
  TTGACCATAT TATGATTCTT GCTTGATGCT GTAGTGTTAG AGGGAGAGGA GCAGCAGAAA
  ATAAAAATTG TTTTCTCGAG TCTTCCTGAT TTTTTAATGT GAAGAAAGAA TGCTTTCGTC
  AGGAACTCTT CCTGGATCTT TCACCAGGGA TAGAGACATC TTTCATTTTT TCACAACATG
  Y
  GGCTCCTCTT CCTTTAACAC CACAGTGGCA GACACTCCTG CCTCCTTTGC ACCCCCCCCC
  TCCCCAGGTC TGGGTAGAAG AGAGGCTTTG AGAAGAGTGA CAGGCTCCCT GTGGTAGGTC
  TGTGCCTTGT CACCAAGCCT CCTAAGCTCA GGTCTGTGGT AGCCACAGGA GAGCTAGCTC
  CATGCTGTGT GGCTGGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss147336383	ENSMUSSNP2481633	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs51754073					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119669927 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			112 bp upstream
Rr398436	regulatory region 398436			670 bp upstream
Rr598655	regulatory region 598655			within coordinates
Rr598656	regulatory region 598656			1275 bp proximal
Rr598657	regulatory region 598657			1776 bp proximal
Tssr38753	transcription start site region 38753			326 bp upstream
Tssr38754	transcription start site region 38754			1577 bp upstream
Tssr38755	transcription start site region 38755			1645 bp upstream
Tssr38756	transcription start site region 38756			1774 bp upstream
Tssr38757	transcription start site region 38757			1803 bp upstream