rs51746860 SNP Detail

Summary

• ID
  rs51746860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCTTCTG TCTTGTTACT
  TCCATGAAGG CTTACTAACA GGCTAACCTC AGGTTGGAAA TGATTGTAAT CCAGACAGTC
  ATGCCTTTCC ATTCTCTTAT ATGCTAATGA GAAAGCAAGC AGCTTTGCAT CTGTTGCATT
  ATGTGTCTTC CCGAGGAAAT GTCACATGGT ACTAAGCATG GGGACAAGGT TCAGCCACAC
  R
  TCATCCACAC CCTAAAACTC ACCCCTTACT GGGTGGCCTC CTCTTCCCAC TTCAAAACCT
  TTGTAGAGTG AAAATCACAT TGAGCCTTAG AGCCTTCTTC CATGTTACTT TCTCTGTTTC
  TTGCTAACTA TTTACCATTT TGGATATTCA GTCATAGGTA GGTAGGATTA TTTAAATCTT
  CTAAATGTTT TTTTTAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135837703	ENSMUSSNP3974632	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320946904	CHEV_3_126343971	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51746860					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584664	regulatory region 584664			1202 bp distal
Rr584665	regulatory region 584665			within coordinates
Rr584666	regulatory region 584666			191 bp proximal