rs51744745 SNP Detail

Summary

• ID
  rs51744745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39514468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAAGACAG ACAAGAAGGT AATTTAGCCA AAAACAACAA
  ACCTATATTT ACCACAAAGT CCAACTCACA GGCTAGGAGT GAAACAGAGC CGCAAGTTCA
  R
  GGTCATCCAG GCTGGTGTGA GGCTGACAGG GAAAGCCCTG TGCTAGGGGC AGCCCTCGGC
  AGGTTTCTAA ATCTGAATTA GGTGGTATCC AGGCATCTCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60392727	NES15896469	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51744745					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60392727	NES15896469	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39514468 () rs orientation: forward

Symbol	Name	Function Class
Gm30063	predicted gene, 30063	461 bp upstream
Rr575757	regulatory region 575757	within coordinates
Rr575758	regulatory region 575758	559 bp proximal
Rr575759	regulatory region 575759	1429 bp proximal