rs51741814 SNP Detail

Summary

• ID
  rs51741814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31731506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGCGCGA ACGGCGTGCC
  GTCCAGGAGC ATGCGCGCAG GGCGTAGTCT CATTTGATTT CGGTGCCCGG AGGTGCTGAT
  GCTGTAGATC CCTCCACCTG CCTTTGGTGA TTGACTTTTC TGCCTGTCAG GTTAGGTGGC
  TTCTCTTGGA CGGGGTCTGG TACTCATTGT GTGCCGGTTT AAAAAAAATA ACAACAAAAA
  R
  CTGCTGTGTG GCATCAGAAT TGGATGGCCA GGCCCAATAT GTAGCCATGA ATGCGTACGA
  GTCACTGGAA ATGTGCTCAT TTAAGACAAA CACCTCTTGG ACCCCCAGCT GTCAAACGAG
  TCTAACGGTG TGCCTGCCCA GATCACCAAA AGACTCGTTC CATCCATCCC AGTGACTCAC
  GACGTCCAGA ATATTGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60257939	NES15756517	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51741814					SNP	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257939	NES15756517	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31731506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm50103	predicted gene, 50103			within coordinates
Rr370216	regulatory region 370216			72 bp downstream
Rr525507	regulatory region 525507			1392 bp distal
Rr525508	regulatory region 525508			170 bp distal
Rr525509	regulatory region 525509			within coordinates
Rr525510	regulatory region 525510			209 bp proximal
Tssr147287	transcription start site region 147287			299 bp upstream
Tssr147288	transcription start site region 147288			208 bp upstream
Wdr4	WD repeat domain 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant