rs51741772 SNP Detail

Summary

• ID
  rs51741772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTAA GCCACACTGG
  GCCAGGAGGT GAACCTTTAA GCAGAAGAGG AAGGTGGACG AAAGGTAGAG CATCAGTCCA
  CCATTTCTGG TCTTCCCAGC AAAAGGACAG ACAGAGAAGC GGGCAGGCTT TCAAGTGACC
  CCACCTACCT GCCGTTGCGG TCTTCGCTGA TTTGGATGCA GAGGCGTTAG CTGCGTTCTT
  R
  GTCTCCTTGT CCTTCTCTTC TCCGCGTGTG GCTTTGACCT CAGGAGTGGT GGTGGTCTTT
  GTAGCTTTTT CCACGGATTC TTTCTTCTTG GGAGAAGCCA CTCTGGACAC CTTGTCGGAG
  GATTCCTTCA AAGCTCCTGG TTTGGGGGAA GCTGCTAAAG GCTTGGACTT CCCATCACCC
  TTTTTGACAG GTGAAGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52684846	NES15534655	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51741772					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684846	NES15534655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565772 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr4149	transcription start site region 4149	328 bp upstream
Tssr123695	transcription start site region 123695	1926 bp upstream
Tssr123696	transcription start site region 123696	627 bp downstream
Tssr123697	transcription start site region 123697	817 bp downstream
Tssr123698	transcription start site region 123698	948 bp downstream
Tssr123699	transcription start site region 123699	1039 bp downstream
Tssr123700	transcription start site region 123700	1064 bp downstream
Tssr123701	transcription start site region 123701	1122 bp downstream
Tssr123702	transcription start site region 123702	1142 bp downstream
Tssr123703	transcription start site region 123703	1194 bp downstream
Tssr123704	transcription start site region 123704	1245 bp downstream
Tssr123705	transcription start site region 123705	1553 bp downstream
Tssr123706	transcription start site region 123706	1771 bp downstream
Tssr123707	transcription start site region 123707	1960 bp downstream