rs51735479 SNP Detail

Summary

• ID
  rs51735479
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63804729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCGCACAC ACACATACAC
  ACACACACAC ACACAGTGCT TTATATTAAG GAATCCTAAC ACAAATCACC TTTATCACCT
  CTGTTTTTAT AACTCTATCT CTTATAATTA TACAAGAGAC TAATTTTTTC AAAACAAATT
  TACTTGAAGT CAATGAAGTG GAAACTATGT GAAACAGAAG CAAGGATAAT TCGTTTTATT
  M
  CAAGCCACTA TAAATCTCAC TCTGCCTCCC AACCTCCCCT CCCTTTGTCT CCTTCCCAGC
  CTTCCTCCAG GCACTCCCAA TCTCATTATT CCATGATCTG CTAAAACCAC AGTTTACCTC
  CTGGAACCAG TAGAACACAC ATCACTGAGA ATTAGGGAAT TGGAGACAGT TACAAGCCAC
  CAAACAGGGT CATAAAGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60416448	NES15918963	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51735479					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416448	NES15918963	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63804729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	1335 bp proximal
Plch1	phospholipase C, eta 1	Intron
Rr577600	regulatory region 577600	1078 bp distal
Rr577601	regulatory region 577601	within coordinates
Rr577602	regulatory region 577602	931 bp proximal