rs51729787 SNP Detail

Summary

• ID
  rs51729787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69766403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT CAAGTTGACA CAAAACTAGC
  Y
  AGTACAAACA CCAAACATCC CAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135272145	ENSMUSSNP6967756	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51729787					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69766403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	1137 bp proximal
Rr578229	regulatory region 578229	663 bp proximal
Rr578230	regulatory region 578230	842 bp proximal
Rr578231	regulatory region 578231	1182 bp proximal
Rr578232	regulatory region 578232	1242 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	785 bp downstream
Tssr33557	transcription start site region 33557	196 bp upstream
Tssr33558	transcription start site region 33558	805 bp downstream