rs51718544 SNP Detail

Summary

• ID
  rs51718544
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCGTGGGG GAGGGGGTAA
  CATAGTAGAA AGGAGAACCA GGTTTGATAA GAGTTGGGAT TTTTATGTTT TATCTGGAAG
  TTGTGGACCT GGGTGAGCCT CTGCAGTCCT ACCAGGTGAA TTTAACCTGT AAAGGGTCCT
  CTGAAGGGGA GATGGTCAGG AATGTCTGTT ACCCGCTTGA GCTGGGTGTG ATGAATCCAG
  K
  GGGTGATCCC AGCAACCTTG ATAGCAATGG GTGTGGTAAG AACGATAGGA TTCGGTCCAT
  GATTCCTATT GAGGAACAAT AGGAAGGTTC CACGATTCAG GGACAATCAA GAACACTTTT
  CTCGCCTGTA TTCACCTTGA GCCTACTTCC TTGTCCTAGC CCAATGTCAA AATCTTGCCT
  GAGCCTACTC CCTCGTCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149030183	ENSMUSSNP2448248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51718544					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622460 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1234 bp upstream
Rr480227	regulatory region 480227	923 bp proximal
Rr480228	regulatory region 480228	1021 bp proximal
Rr480229	regulatory region 480229	1641 bp proximal