rs51710337 SNP Detail

Summary

• ID
  rs51710337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41573459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTTTT GCCAATGAGG
  AAACTGAGGC TTTCCATCTG TGGGGTGATT TGGAAACCAT TCCCGATAGT CTGAGTCTCC
  ACCCTCTGCT GATCTCAATA TGAAAGCAGT TCACAAAAAG CAGTCCAAAT GCTCTTGAGG
  ACATACAGGT CTATATATAT GTGAACTTCA TTTCATTAAA TCATCTATAG TAAAATCAAT
  Y
  GTTTTCGCTT AGCACATCAT GCTAAAGAGA CTATGAGCAT AAAATGATAG AAGTCCAGTC
  TGTTATGGAT TATGTTCTGC CTTTTGGTTA GGAAGAACGG AATTACTTTA GCCATATGCT
  TTCATGTAAC ATATATATCT ACAGTAAGAC AAATAAATGC ACATATGATT AGGTAAAATA
  ATACTGCTGT TAAGAATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397309	NES15898379	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51710337					SNP	T	T	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397309	NES15898379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41573459 () rs orientation: forward

Symbol	Name	Function Class
Rr575994	regulatory region 575994	1740 bp distal
Rr575995	regulatory region 575995	115 bp distal