rs51708555 SNP Detail

Summary

• ID
  rs51708555
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60407276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTACTTTT TTGAGTGTCT
  CTCATTGAGT CTGGAATTCA GAGTTAACTG GCTAATGGGC TGTGAATATC TCCCATTCTC
  TACCTGATCC CAGCACTGTG GTTACAGACA CTTGCCTAGA TGTTCGGAAT TTGAACTCAG
  GTTCTCAGAC CTGAGCTCCA GCTTCTTTAC GCAGGAGTCA TCTCCCTAGC CAGCTAGCCT
  M
  TCCAGGCAAC TCTCTTTTTA TCTTAGCAAC TTCTGCACAT CCTTCAAGGC GCTGCTTGCA
  TAAGTTCCTC CAGGGAGCCT TCCCTCCTTT TCTCAAGGGC ATTTTGGATA TTTGCCTACC
  ATCTTAGCAC CAGCTGGCTG GTGCTCTTTT CTACCATGCT GCTCCAAAAA GTACAATCCG
  TGTACTCCAT CCTCCTGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135219284	ENSMUSSNP4599298	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51708555					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60407276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13210	CpG island 13210	859 bp proximal
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr577409	regulatory region 577409	167 bp distal
Rr577410	regulatory region 577410	834 bp proximal
Tssr29277	transcription start site region 29277	1926 bp downstream
Tssr29278	transcription start site region 29278	826 bp upstream
Tssr29279	transcription start site region 29279	902 bp upstream
Tssr29280	transcription start site region 29280	1359 bp upstream
Tssr29281	transcription start site region 29281	1402 bp upstream
Tssr29282	transcription start site region 29282	1522 bp upstream
Tssr33421	transcription start site region 33421	1873 bp downstream
Tssr33422	transcription start site region 33422	1970 bp downstream