rs51706518 SNP Detail

Summary

• ID
  rs51706518
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGAGACAC ACATCCTTAA
  TTCTGAAGGT TTGCAACAGG CCTACAGCTG CTGTCCAGAA TGACATCAGC CCAGAAATCC
  CACCAGACGG ATCCCACCAC ACTTTGCTCT CTCTAAGCCA CACTGGGCCA GGAGGTGAAC
  CTTTAAGCAG AAGAGGAAGG TGGACGAAAG GTAGAGCATC AGTCCACCAT TTCTGGTCTT
  S
  CCAGCAAAAG GACAGACAGA GAAGCGGGCA GGCTTTCAAG TGACCCCACC TACCTGCCGT
  TGCGGTCTTC GCTGATTTGG ATGCAGAGGC GTTAGCTGCG TTCTTGGTCT CCTTGTCCTT
  CTCTTCTCCG CGTGTGGCTT TGACCTCAGG AGTGGTGGTG GTCTTTGTAG CTTTTTCCAC
  GGATTCTTTC TTCTTGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52684848	NES15534653	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51706518					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684848	NES15534653	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565666 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Intron
Tssr4149	transcription start site region 4149	434 bp upstream
Tssr123695	transcription start site region 123695	1820 bp upstream
Tssr123696	transcription start site region 123696	733 bp downstream
Tssr123697	transcription start site region 123697	923 bp downstream
Tssr123698	transcription start site region 123698	1054 bp downstream
Tssr123699	transcription start site region 123699	1145 bp downstream
Tssr123700	transcription start site region 123700	1170 bp downstream
Tssr123701	transcription start site region 123701	1228 bp downstream
Tssr123702	transcription start site region 123702	1248 bp downstream
Tssr123703	transcription start site region 123703	1300 bp downstream
Tssr123704	transcription start site region 123704	1351 bp downstream
Tssr123705	transcription start site region 123705	1659 bp downstream
Tssr123706	transcription start site region 123706	1877 bp downstream