rs51701970 SNP Detail

Summary

• ID
  rs51701970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127684831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACTGGT TGGGATTTAG
  GATGCAGAGG GCATGGGAGA GAAGTTTACA TCAGGCAGCC AGAGCAGACA AAAGAGGCCT
  CTAGGAAGGG GTTTTCCTCA GCTCCCAGTG TTATCACATT ATGAATCCAT CTGGGTGAGA
  GCTTTATGAT CTACCTCTAA CCTTCTGTGA CCTTGCAGAC TACCCAGAGG TATGTTTTAC
  Y
  AGTGTTCTAG GCATTCCCCT TTAAACAGAG TCTCACTCAC ACACAGTCTA AACTGACCTT
  GAACTCACTG TGTAGCCCGG GCTAGCATGA CAAATGTGCA CTACAGAACC GAGTTTTCTC
  TCTTTCTTGA TCCAGTCATG TTGCCAGTCA CAACCACTCA TTCCAAGGGG ACTGTTTTCT
  ACATTATAGG CTGTTTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874337	ENSMUSSNP4339665	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957943	CHEV_3_127594100	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51701970					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127684831 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	1258 bp distal
Rr584893	regulatory region 584893	861 bp distal
Rr584894	regulatory region 584894	within coordinates