rs51700440 SNP Detail

Summary

• ID
  rs51700440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15746258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGTCTT CACTCTGCTG
  ACCAAGTGTT TACACCCACT CGCACAGTCG CTTTGCTTAT TGTCCCAGAG CACACCATGT
  GATCATCAGT TAGTACAAAT CAAGCGAACA GCTTGGTTTC CAGTGGGGTG TGTGTAGTGG
  TGAGCCATTT TTGGATGTTC TCCTACATTT ACCTCCTCTG TTAATTGTAA CCATCTAGAC
  M
  CCTATTCTAG AGCAGAGGTG AAGTTTCCTG ACACAATTCA CTTTCATGAT AGATTGTTCC
  ATGCTTACCC TGGGTTCTTT CCCTTAATTG GAGTTAAATA GTGTTCATCT TTTGTGTTGA
  ACATCTTAAT AGTAGGTATG GGAAGGCCAG TGGAAATGAA CTGCTAGGGA AAAGGTCCTG
  ACTGAGTGGT TACTTACCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60865001	NES15988527	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51700440					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865001	NES15988527	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15746258 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399574	regulatory region 399574	231 bp downstream
Rr626682	regulatory region 626682	521 bp distal
Rr626683	regulatory region 626683	within coordinates
Rr626684	regulatory region 626684	1550 bp proximal
Tssr1783	transcription start site region 1783	956 bp upstream