rs51698984 SNP Detail

Summary

• ID
  rs51698984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34534005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGTGTGA TTCTCCAGCA
  GTCATGAGTT CGTAACTCTA AGGGAGTACG CGCTGAGGTC ACTAGCTGAT GGTGTATTTC
  AGCATATGCA CAAACACAAG GAACTCCAGC ACAACCCTCG TGTGCAAGGT TGGAAGGAAG
  GCTCACCAGT GTGGCTTGCT CGTGCGAAGA AAATCGCACT GCGGTGAAGC ATTTGGAAGA
  Y
  TGTCTGTTTC CCCATCTCGC TCTTTGGAGT CTCTATTTTT GTTGTCCTCA AAAATATTCC
  TCCTTCATTC AATGAAGGGT TTTGGTTTTA TCTTGTGCCA GGTACTGAGT TATTGTAAGC
  ATGGCGGGCT AATTAAACCT CCTAGGAAAA GGACTACAGC AATGGCTCAT GTGGTGGAGT
  ATTTGCCTGG CATGCATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386315	NES15888837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51698984					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386315	NES15888837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34534005 () rs orientation: forward

Symbol	Name	Function Class
Gm42695	predicted gene 42695	1572 bp downstream
Rr575139	regulatory region 575139	1382 bp proximal