rs51696669 SNP Detail

Summary

• ID
  rs51696669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27244397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGGGG AGAGAAAGCC
  ACTGCGTTGC CAAGCAACAA GCCTGGCAGC GTTCCCAGGA CAGTCTGAGG TGTGTCCTAT
  TATGAAATGG TAGCAGTAGA TTTTTTTAGT GTTTCCAGAA TCAAGTTAAA ATCCTGCCAC
  CCGGAAGTCA TCATATCATT TATGCATACA TGTAATGTAT ATGTATCATC ACATATAGTG
  Y
  GTGTCCACAT ATGTGCACAT GTGATGGTGT ACTTGTGTAA TTCCAGTGGT TGGAAATGTT
  GACTAAGGAG AAAGACAAGT TCAGGGCTAG CCTGGGCAAC TTAGTAAGAC ACCCAACCTC
  ACGCATGCTA AGTGTGTCTT CCATCATTGA GCTGCACATT CCTGGGGGTG CATATTCAAT
  AAAGACATTT TTCTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380389	NES15883730	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	C	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51696669					SNP	T	C	C	T	T	C	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380389	NES15883730	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27244397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			within coordinates
Rr574359	regulatory region 574359			1472 bp distal
Rr574360	regulatory region 574360			44 bp distal
Rr574361	regulatory region 574361			535 bp proximal
Rr574362	regulatory region 574362			1613 bp proximal
Tssr28607	transcription start site region 28607			1839 bp downstream
Tssr28608	transcription start site region 28608			1807 bp downstream
Tssr28609	transcription start site region 28609			1790 bp downstream
Tssr28610	transcription start site region 28610			1884 bp upstream
Tssr32839	transcription start site region 32839			1682 bp downstream
Tssr32840	transcription start site region 32840			1726 bp downstream