rs51695745 SNP Detail

Summary

• ID
  rs51695745
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141173594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACACAC ACATAAACAC
  ACACACACAA AATTGAGAGA GAGAAAAGAC TAATTTAGGT GTAAGGGTGG CCTTGAGTAA
  TTTTAGATTA GATGCAGAGT GGGAGGAGAT AATTTTGGAG GTAGAATTGA TAAAACTTGG
  TGACAACTTC AGTGAGAAGC CACAGAGTCA TCAGGTTTGT CCCATTCTTC AAACTGTAGC
  G
  TGCGTGCAGA TCAGAGGACA CCTTGATTGG GTTCTCGTCT TCTACCGTGT TGAGTCAGAG
  TCTCTGTCCT TCCTGCTGTG TGGTGTAGCA GGCTGGCTTC CTGCATCCAT CCGAGTCTCC
  TTCCATCTGC CTGGCAGCTC TCCCTGGGAA AGCTGAGATC ACAGCTGTGC CCCACTGCAT
  TGTGGGCTTT GAGGAATCAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147737279	ENSMUSSNP1575861	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51695745					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141173594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			579 bp distal
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1619 bp distal
Rr603769	regulatory region 603769			570 bp distal
Rr603770	regulatory region 603770			1157 bp distal
Tssr40079	transcription start site region 40079			1569 bp downstream
Tssr44320	transcription start site region 44320			843 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant