rs51690368 SNP Detail

Summary

• ID
  rs51690368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108448551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATAAA TTCATAAATA
  TTCTTATGCA TGCACAGTTC TAATTAGTAT GGGTGGCATT AGCTACTTTT CTTATTTCTG
  TGGCAAAGGA CCTGACACAA ACAACCTAAG ACAAACCAGG CTTATGCAGA GCAGGCTTCG
  AGGTTGTAGT TGTCACGGAG GGAAGGCCTG GCGGCAGGGA TGTGAAGCAA CTGATCACAC
  Y
  GCATCCCCAG TCTGCAAGCA GAGTGGATTC TCGGCTCCTT CTCATTCAAG TCTCAGCACC
  AGCTGAGGAA ATGGTGCCAC TCACATTCGG GGTTATTCTT CATACATCAG TTAACCTCAT
  CAAGAAACTC CCTCAGAGAT AAGCGCAACG TTGTGTTTCT GTGGCAACAC TAAATCGCAT
  CAAGTTGGCA TTCGAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133503044	ENSMUSSNP6077037	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51690368					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108448551 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	520 bp proximal
Rr636116	regulatory region 636116	942 bp proximal
Rr636117	regulatory region 636117	1225 bp proximal
Tssr58061	transcription start site region 58061	1443 bp upstream
Tssr58062	transcription start site region 58062	1477 bp upstream
Tssr58063	transcription start site region 58063	1494 bp upstream
Tssr58064	transcription start site region 58064	1525 bp upstream
Tssr62385	transcription start site region 62385	59 bp downstream
Tssr62386	transcription start site region 62386	946 bp downstream