rs51690318 SNP Detail

Summary

• ID
  rs51690318
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57043232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC TAAAACCATT CATAAAACTA
  M
  CATTGGGAAA GGGAGCCAGT GGTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135198875	ENSMUSSNP2197442	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320779466	CHEV_3_56939733	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51690318					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57043232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	1009 bp proximal
Gm8177	predicted gene 8177	within coordinates
Gm64707	predicted gene, 64707	1266 bp upstream
Rr375016	regulatory region 375016	547 bp upstream
Rr577070	regulatory region 577070	975 bp proximal
Rr577071	regulatory region 577071	1277 bp proximal