rs51683174 SNP Detail

Summary

• ID
  rs51683174
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CTGTCCAAAA AGGTAAAGAT
  A
  GGGCTTTGTG AGGCAGAAAG GAAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss146960069	ENSMUSSNP5265465	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs51683174					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	447 bp proximal
Cpgi1374	CpG island 1374	1235 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	657 bp upstream
Raet1e	retinoic acid early transcript 1E	590 bp upstream
Rr384270	regulatory region 384270	1381 bp upstream
Rr428833	regulatory region 428833	127 bp proximal
Rr428834	regulatory region 428834	645 bp proximal
Tssr92677	transcription start site region 92677	443 bp upstream
Tssr92678	transcription start site region 92678	517 bp upstream
Tssr92679	transcription start site region 92679	569 bp upstream
Tssr92680	transcription start site region 92680	614 bp upstream