rs51682235 SNP Detail

Summary

• ID
  rs51682235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65835973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTGCAG AAGACCCAGG
  TTTGATTCCC AGCACCCACA TGGGTGGCTC ACAGCCATCT GTAACTCCAG TTTCAGGGGT
  CCCGGCATCT TTTGGCCTCC AGGGCACTAC ATATATGTGG TACACCGTCA TACATGCACA
  CAAACCACAT GCACACATTT TTTTTTAATT AAAAAAATTA AAACAAACTA GACAAGGTTG
  Y
  GTCTTGCTGT ATCTACTTCA GAATTAGTTG ACATTTTATG CTTCCCCCTA AGGAAACAAA
  CAATACTGCT CTTATTTTTT CCTTGTAGAT TTAACATCCC CTTCACTTTC TCAGAATGAA
  ATTGAGCGCC AGTTATCTGT ACAGTAAGAA AGCTCCTCAT AGTGTGCAGA GTCCAGCAAG
  GACTTTGCCC TTCTTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60417555	NES15922209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51682235					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417555	NES15922209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65835973 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	264 bp upstream
Gm65138	predicted gene, 65138	within coordinates
Rr577758	regulatory region 577758	693 bp distal
Rr577759	regulatory region 577759	397 bp distal
Rr577760	regulatory region 577760	109 bp proximal
Rr577761	regulatory region 577761	815 bp proximal
Rr577762	regulatory region 577762	1116 bp proximal
Rr577763	regulatory region 577763	1909 bp proximal
Tssr33471	transcription start site region 33471	803 bp downstream
Tssr33472	transcription start site region 33472	863 bp downstream