rs51677667 SNP Detail

Summary

• ID
  rs51677667
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66445849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGAAC TACAGATGTG
  ACATGGCACG TATGCCATGG CGTGTAAAAG CACCCACATG AACGTGCAAA GAGCAGACGT
  CCTAAGCGAA TGTATATTGT TGACATGCCC ACAGCCAGGT CAAGGACATC AATGTCTCAA
  GTCCATAGGA ATTAGTAAAT CCTTCCTTGG GTGAGGCTCA AAGGCAAAGC TTCCCTCTGG
  W
  CCAGTGTAAG CATTTAGGAG CTATTGACCA GAGTGAGCAA AACCTAGGAA GTGAGGGTCT
  TCCTCCAGGA TGGCTCCCCC CAGAGGTTCC AAGTTGTTGT ATAGCTGGCA CTGGTCCAGC
  AGGGGGAGTA GTACCCACCT TATTCCAGCT TTTCTGTATT GTGTGTCTAT GTGTCTGTCC
  CTTTTACATT CCCTCATTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss63152007	NES17452083	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs51677667					SNP	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63152007	NES17452083	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66445849 () rs orientation: forward

Symbol	Name	Function Class
Gm15958	predicted gene 15958	within coordinates
Rr539711	regulatory region 539711	1350 bp distal
Rr539712	regulatory region 539712	70 bp proximal
Rr539713	regulatory region 539713	112 bp proximal