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rs51676113 SNP Detail
Summary
  • ID
    rs51676113
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr1:172316308 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                        T CTTATTTTGA CTGAGGAAAC TGAAATTGAC AGGTTGAGTA
    ACTTGTTCAA AGGAACATGT GGCTGAGCTG GGCTTGTGCC TGGGTTCTTT GGGGCTGCCA
    M
    GCAAGCACCT TACTCACGTA GACTGCACTG CTAGGGATGT TTCAGGCTGT CAGGGTGCCG
    GGTTCCCTCA GAGGAGGGTC CTGAGGGACT GGGCGAGCAC A                    
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
DBA/2J
ss120011483 PARCsnp_1.19820 PARC_SEQ INBRED f SNP A C
ss120014487 PARCsnp_1.09856 PARC_SEQ INBRED f SNP A C
ss146193509 ENSMUSSNP6251812 ENSEMBL ENSEMBL_Sanger f SNP A C
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
DBA/2J
rs51676113 SNP A A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:172316308 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi1051 CpG island 1051 1772 bp proximal
Igsf9 immunoglobulin superfamily, member 9 Intron
Noncoding-Transcript-Variant
Rr423586 regulatory region 423586 1848 bp distal
Rr423587 regulatory region 423587 within coordinates
Rr423588 regulatory region 423588 946 bp proximal
Rr423589 regulatory region 423589 1826 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory