rs51676113 SNP Detail

Summary

• ID
  rs51676113
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTATTTTGA CTGAGGAAAC TGAAATTGAC AGGTTGAGTA
  ACTTGTTCAA AGGAACATGT GGCTGAGCTG GGCTTGTGCC TGGGTTCTTT GGGGCTGCCA
  M
  GCAAGCACCT TACTCACGTA GACTGCACTG CTAGGGATGT TTCAGGCTGT CAGGGTGCCG
  GGTTCCCTCA GAGGAGGGTC CTGAGGGACT GGGCGAGCAC A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss120011483	PARCsnp_1.19820	PARC_SEQ	INBRED	f	SNP		A	C
ss120014487	PARCsnp_1.09856	PARC_SEQ	INBRED	f	SNP		A	C
ss146193509	ENSMUSSNP6251812	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs51676113					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1772 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			1848 bp distal
Rr423587	regulatory region 423587			within coordinates
Rr423588	regulatory region 423588			946 bp proximal
Rr423589	regulatory region 423589			1826 bp proximal