rs51675698 SNP Detail

Summary

• ID
  rs51675698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84122580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGTGTA GGGTGTGTGT
  GTGTGTGTGT GTGTCTGGAT GTGTTATAGG AGTCATCTAG GTATAACAGA TGTCAGAGAA
  CAAGGCTATA AAAAGTTTCT AGAGTGTTTG GAGAAATTGG GGGAAAGGTG AGTTTTGCCC
  TGAAGGATGT ACCAGGTTCT AGAAGGTGGT ATAGAAAACT GTCTCAGCCA TGAGCAGGCA
  Y
  ACCTAGCAAG GGCTCAGAGA GGACCTGATG ATGATGGCAG AGCAGGTAGC AGTACAGTCA
  AGGAGAGCCA CTTCTTTGCC TGCTCCTATC TCTGCTGAAT CCCCTTCCCT TACTCCTGTA
  TCTTCTCACA GTCATTGCTT AGTAATTCAG AGTTGCTGGG TAGCTAGGGA CAATGACCAA
  CAGAGAAATG GCTCGGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905092	NES15952160	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51675698					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905092	NES15952160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84122580 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dysf	dysferlin			Intron
				Noncoding-Transcript-Variant
Rr632999	regulatory region 632999			815 bp distal
Rr633000	regulatory region 633000			1262 bp proximal