rs51672829 SNP Detail

Summary

• ID
  rs51672829
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78692310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCGTTGA GCAATAACAG
  GTCTGTGATG CCCTTAGATG TCCAGGGCTG CACGCGAGAT ACACTGACTG GCTCAGCATG
  TGCCTACACT ATGCCCGGCA GGCGCGGGTA ACCCATTGAA CCCCATTCGT GATGGGGATC
  GGGGATTGCA ATTATTCCCC ACCAACGAGG AATTCTCAGT AAGTGCAGGT CATAAGCTTG
  M
  ATTGATTAAG TCCCTGCCCT TTGTACACAC TGCCCGTCAC TACTACCAAT TGGATGGTTT
  AGTGAGGCCC ACTGGGGTCA GGCCGTGGTG GAGCGCTGAG AAGATGGTAG AACTTGACTA
  TCTAGAGGAA GTAAAAGTCG TAATGAGGTA GTCTTATTCC TGAGCCTGTT TTCCTAGATT
  CTGGAAGAAA GAGGATGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146655446	ENSMUSSNP6048768	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51672829					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78692310 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	within coordinates
Tssr37651	transcription start site region 37651	349 bp downstream
Tssr37652	transcription start site region 37652	227 bp downstream
Tssr37653	transcription start site region 37653	19 bp downstream