rs51671423 SNP Detail

Summary

• ID
  rs51671423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42029314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCATGGC CGCACATGGA
  TCTGAAAATA CAGGCTTTTT TTTTTTTTTT TTTTTTAAAT TACAGTATTA ATGTAAGGCA
  GAACTGAAAA CTAATATATT CCACTGGTTA TGCCTTGTTC TCAATGCTAT GAGACAACTC
  CGTGAAGCGA TGGGGCTTAA GCTTATCCAC ACAGCGATGA TCCTCCCATA CAGATATTTG
  Y
  TAACAGCCCA GGATTTCTTA CAAGAATGCT TTTATTGCGT TGCTTGCTGA TTTGACACAG
  TTGGACATAC TCATTTCTGT TTCACACTCT GTCACGAAGT TTTAATGTTT AAAAGAGTCA
  ACACTTAGTT TAAGTGTCAT TTCTTCTGTA CACTCGTCCC TGAATTCCCA TTGGAATTTA
  TGTGTACACG TGTTTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60395653	NES15895197	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51671423					SNP	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395653	NES15895197	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42029314 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	within coordinates
Rr576015	regulatory region 576015	216 bp distal