rs51669801 SNP Detail

Summary

• ID
  rs51669801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116454365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGAAA GTTTTCATTG
  ATTTAGTGTG CCACCAAGAC ATTTTTACTA GTAAAAAGTA TTTTGTGTAC TAAAGCAAGC
  TAGAAATTTG CTATATCTTT ATAAATAGCA AAAAGACTTA AACAAACAGA ACCTCTTCTC
  GCCAGGCATG GCAGCACACA CACCTATAAT CCCAGCACTT GGGAAGCACA AGTAGGAGGG
  K
  CCTAAGTCTG AAGTCTTTCT GAACGACCTG AGATCTGTCC TCAGACACAA AGCAAAATCC
  CAACAACAAC AAAAACATGT ATCTCTTCTC AAAGTCAGAA TTTGGAATGA CTCTTCTGGA
  GGCTGACATG AGCTCTAAGT TTGATCCCTA CTATCTCATC AAAAAAATAT TTTACAGAGC
  AAACCAGACA AAAATCCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss135670747	ENSMUSSNP4027685	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs51669801					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116454365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13738	CpG island 13738	1054 bp proximal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	1784 bp upstream
Rr583758	regulatory region 583758	718 bp proximal
Rr583759	regulatory region 583759	1951 bp proximal
Tssr31364	transcription start site region 31364	1045 bp upstream
Tssr35323	transcription start site region 35323	1375 bp upstream
Tssr35324	transcription start site region 35324	1376 bp downstream
Tssr35325	transcription start site region 35325	1554 bp downstream
Tssr35326	transcription start site region 35326	1821 bp downstream
Tssr35327	transcription start site region 35327	1838 bp downstream
Tssr35328	transcription start site region 35328	1855 bp downstream
Tssr35329	transcription start site region 35329	1874 bp downstream
Tssr35330	transcription start site region 35330	1927 bp downstream