rs51669267 SNP Detail

Summary

• ID
  rs51669267
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGAAGGA GTAAACCCCT
  ACATATGAAA ATGTGACCAA AACACATCAG AAATGTGGGG AAAGTACGCT GTCTGTCTGT
  CTGTCTGTCT GTCTGTCTGT CTGTCTGTCT GTCTCTCTGT GTGTGTGTGT GTGTGTGTGT
  ATACAATTCA CCATGGCTGA TGGAGGACTC ACTGTGTGCT CTAAAGAGAG GGGAAATCCC
  S
  AGTCAGCTTT CCAGTGTCTG ACAGTGTAGA TGCTATTGAC TGCATCCCCT TAGAAGAGGT
  TTAGGGAACG GGCCACCTGT CCCTCCCCTG CCCCAGGCCT GCTCCCTTAT TTCCTTGGCT
  TCTTGGGGTC AGACCAGTCT TCAGGGACTC TGAGAGAGAT GGCCTCCATT ACACAGGGTG
  GCTGGGTCCC CTCCCCACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147994716	ENSMUSSNP3759855	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51669267					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246512 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			1011 bp distal
Cpgi15296	CpG island 15296			1909 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1849 bp upstream
Rr398857	regulatory region 398857			1726 bp downstream
Rr604608	regulatory region 604608			1424 bp distal
Rr604609	regulatory region 604609			294 bp distal
Tssr40263	transcription start site region 40263			1859 bp downstream
Tssr40264	transcription start site region 40264			1425 bp downstream
Tssr40265	transcription start site region 40265			1403 bp downstream
Tssr40266	transcription start site region 40266			1375 bp downstream
Tssr44600	transcription start site region 44600			1983 bp upstream