rs51657761 SNP Detail

Summary

• ID
  rs51657761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102997306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCAGGG CCCTTACCCT
  TGACCTACAC AGGCCTCATA GATTTTTAAA TGCCATCTCT AGTGCTCCCT CATCACCATG
  TCCAGCTCTG ATGGAAAGCT GGGTACTTTT TCAGTGGGAT TAACTGGAAG AAAGCAGTAT
  CTGTTCCTGC AACCACTCCC TCTTATGGGT GAGAAGAGTC CTGGAGGCTT TGAAATACCA
  Y
  TTTCCTTACA TGTCGAGAAA GATGCTTAGG ATCCTGTGTG TTCACTTTCC ACAGTAAGAC
  TTATGCTCAC CGCCGCCTGA AGTTCCTCTC CTCCAAGTTC CAGGTCCATC AGATGCTCAA
  CGAGATGGAT GAGCTGAAGG AGCTGAAGAA CAACCCCCAC CGGGACTTTT ATAACTGCAG
  GAAGGTAAGT GTGTCAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60430061	NES15929609	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51657761					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430061	NES15929609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102997306 () rs orientation: forward

Symbol	Name	Function Class
Ampd1	adenosine monophosphate deaminase 1	Intron
Rr582303	regulatory region 582303	1827 bp proximal
Tssr30964	transcription start site region 30964	193 bp upstream
Tssr30965	transcription start site region 30965	240 bp upstream