rs51657747 SNP Detail

Summary

• ID
  rs51657747
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88739269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGGAAGGGGC ACCGCCCTGT GTGCCCCTAG GGGGAGGGCT
  CCGCCTACCT CACCTCTCTT CCTCCAGAAA GAGGGGTGGG GGGGGGTTGT TCACATCCTC
  C
  GCAAGCTTGC CATTTCTCAC CTCCAGACGT GCTGACAGTG CACCATCAAG GGTTTACCAT
  CAAGGTTTTA GCGTCCTGGA CCTGCCTATC CTCGGTGGCA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135472271	ENSMUSSNP6818650	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs51657747					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88739269 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	within coordinates
Rr375322	regulatory region 375322	within coordinates
Rr397779	regulatory region 397779	542 bp upstream
Rr579901	regulatory region 579901	515 bp distal
Rr579902	regulatory region 579902	within coordinates
Rr579903	regulatory region 579903	368 bp distal
Rr579904	regulatory region 579904	514 bp proximal
Tssr34067	transcription start site region 34067	584 bp downstream