rs51657553 SNP Detail

Summary

• ID
  rs51657553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123031231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATCACAGA CTGCTGGACT TTTGCAGCAA ACACATTTCA
  CAGTGCTAGA GGGGTTACAG CTCAAATGTC TTGTGTTTGA ACACTTGGTC TGGTGGCACC
  R
  CTTTTGGAGA CTGTGGAATC ATTGTGACTG TGTCTAACCT AGCACAGGTG GGTCACCAAG
  GGTGGGCCTT AAAGGGCCAT GTCCACTTCT GGCTCTGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135760941	ENSMUSSNP6136944	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320918252	CHEV_3_122940500	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51657553					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123031231 () rs orientation: forward

Symbol	Name	Function Class
Rr584475	regulatory region 584475	1156 bp distal
Rr584476	regulatory region 584476	81 bp distal
Synpo2	synaptopodin 2	1433 bp upstream
Tssr35497	transcription start site region 35497	1460 bp upstream
Tssr35498	transcription start site region 35498	1425 bp upstream