rs51654078 SNP Detail

Summary

• ID
  rs51654078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCCAAG TGAGTAATTC
  TGACGTTGAG ATTTGTAACT GGGAAGAAAA GATTAGTTTC AACATTTACA CAGGAATGAG
  TCTCTCCATG AAAGGCATGT ATACACATAC CCCACCACTC AAGCTGGAAA GGAGAGAAAG
  TTAAGTCTCA TCAGAGATTC AATCAATAAT GCTGTATTAT TATAGCAAGC CTCTTTTCCT
  R
  CTAGTGATGA AAATGAATTC ATTGTGTTAA GAAAATTTGT CTGTAATACT TTCTAGAATT
  GGATTACTGA TTCACTGTTT TGTGTTCGAA TTTATAAAAA TTCTCTGAAA ATCTAAGTTC
  ATAAGGATTC ATGGAAAATC TTGAATAAGC TGTGCTAATC ACATGATCTA TCTGTCTTAC
  CCTGATCTTA TATCTATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132961571	ENSMUSSNP7178198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51654078					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103885 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1222 bp proximal
Rr626348	regulatory region 626348	1043 bp proximal
Rr626349	regulatory region 626349	1921 bp proximal