rs51652649 SNP Detail

Summary

• ID
  rs51652649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:140460550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATCATT GTATTGATTG
  GATATTACGA TTCTGTGCTC TTTTCGCATG GGGAATTTTA TTGTGAAGAA ATGTTCTGTA
  AACAGTTTTA GCTATAAAAT ATCTGTCACA TAGAATTGCT CCAAGTTCAA GTGCAGTATT
  TGTCTCCCCA CCGCACCCCC AGATTATTCC TAGAGGTCTT AGGCTGAGAT TTTCATAATA
  R
  CCCTCTGAAG TCTGTTAGCC TCCTTATGAG CTTTGATGAG ATGTCTGGAA ACTGTCTTCA
  GTCCATATCA GCAGTGACTA CAGATTTTTA CATTTTAATT ATTTTTTTAA TTGAATCAGG
  AGGTATGGAC ACTAACTGAT TTTCTTATCT GTCCTCACTG AACTGTATAA CTATCCATCC
  TTTTACTAGA TCAAGTTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60810266	NES16487173	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51652649					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60810266	NES16487173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:140460550 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt2	potassium channel, subfamily T, member 2			Intron
				Noncoding-Transcript-Variant
Rr419878	regulatory region 419878			979 bp distal
Rr419879	regulatory region 419879			1076 bp distal
Rr419880	regulatory region 419880			441 bp distal