rs51650480 SNP Detail

Summary

• ID
  rs51650480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:100322873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA GGGAAGCCAC TAACTGGGAG
  M
  CCCTCGCACC TACCTGAGTA GCCGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52203080	NES15329608	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A		C	A	C	C		A
ss323423744	CHEV_10_99949645	CHEVERUD	SCREENING_POP	f	SNP					C					A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51650480					SNP	A	A	C	A	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52203080	NES15329608	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:100322873 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep290	centrosomal protein 290			537 bp upstream
Rr385201	regulatory region 385201			1395 bp downstream
Rr438299	regulatory region 438299			within coordinates
Rr438300	regulatory region 438300			159 bp proximal
Rr438301	regulatory region 438301			326 bp proximal
Rr438302	regulatory region 438302			788 bp proximal
Tmtc3	transmembrane and tetratricopeptide repeat containing 3			Intron
				Noncoding-Transcript-Variant
Tssr95566	transcription start site region 95566			1561 bp downstream
Tssr95567	transcription start site region 95567			562 bp upstream
Tssr99140	transcription start site region 99140			260 bp downstream
Tssr99141	transcription start site region 99141			280 bp downstream
Tssr99142	transcription start site region 99142			305 bp downstream