rs51648386 SNP Detail

Summary

• ID
  rs51648386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94566670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCAGGCA CCAAAGACCA GCTCACTCGG ACTAGTCTAA
  GCCAGTCTGG CAGGTGCTTT TTCCTGGCAA GTAGCCCAGG TCGAAGTCAA AGCCAGCTAA
  R
  CTCTGGGTGG GGCTTGCTTT GCAGAAACTA GACTTATATG GTAGGGAGAG GCGGGACACA
  TGACCTTAAA AGGAATTTGC ACCCTAGAGA AAGAGTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135506944	ENSMUSSNP479684	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51648386					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94566670 () rs orientation: forward

Symbol	Name	Function Class
BC021767	cDNA sequence BC021767	1226 bp downstream
Gm15234	predicted gene 15234	within coordinates
Gm65306	predicted gene, 65306	965 bp upstream
Rr580673	regulatory region 580673	976 bp distal
Rr580674	regulatory region 580674	625 bp distal
Rr580675	regulatory region 580675	398 bp distal
Rr580676	regulatory region 580676	480 bp distal
Rr580677	regulatory region 580677	within coordinates
Tssr34401	transcription start site region 34401	485 bp upstream
Tuft1	tuftelin 1	491 bp upstream