rs51647150 SNP Detail

Summary

• ID
  rs51647150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAGTGAA GACCTTCCAC
  TTGCCAAGGC TGGAGGAATA CAATCACTCC CACCCCCACC CCCACCCCCT CCTCCACCCC
  CACCCCCACC CCACCCCACC TCACACACAG AGTTGTTAGA AATAATACAT AGGCACTGGA
  AACTTGCAAA GTAAATAATT TATGGTGGCA TATAAAATTT CACAGTCTGA TAACTGGGGG
  R
  GGGGGGGGTG TCAGAGTCCT TAGTGGTTGG GGTTGTAATC CCCTCTCTAG AACATAAGCA
  TACATTTAAG CTCTTCAAGC CCTGTTTCTA GAGAGCTATT CTAAGTTAAT AAGAATGAGG
  GCCTGGCGTT TTACATCTGT AATCCTGGTA CTTGTGAGGC TGAGGCATGG GGACCAAGAA
  TTCAAGGCAA AGTCTAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369251533	MGP_WTSI_6_94235179	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	A	A	G	G	G	G	G	G	A	G	G	G	A	A	A	A	A	G	G	A	A	G	G	A	A	A	A	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs51647150					SNP	A	A	A	G	G	A	A	G	G	G	G	G	G	A	G	G	G	A	A	A	A	A	G	G	A	A	G	G	A	A	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369251533	MGP_WTSI_6_94235179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	360 bp distal
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	1268 bp upstream
Rr634856	regulatory region 634856	1373 bp distal
Rr634857	regulatory region 634857	1155 bp distal
Rr634858	regulatory region 634858	608 bp distal
Rr634859	regulatory region 634859	143 bp distal
Rr634860	regulatory region 634860	1469 bp proximal
Tssr62172	transcription start site region 62172	1644 bp upstream
Tssr62173	transcription start site region 62173	1583 bp upstream
Tssr62174	transcription start site region 62174	1394 bp upstream
Tssr62175	transcription start site region 62175	1365 bp upstream
Tssr62176	transcription start site region 62176	1339 bp upstream
Tssr62177	transcription start site region 62177	1249 bp upstream