rs51646446 SNP Detail

Summary

• ID
  rs51646446
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGCCAAA GAAAATTTGC
  TTCCAGTCCA GCTTAGTGAA TGGGACAAAC TTATTGGTGT TGTCTGTAGG GACATGGGTG
  GCTTGGGCAA TTGTATCATC AAAAAGCCTA CCCCAGCATG GTGACAAGTG CTCAAAGCTA
  GTGACATCGC TGGTGTCCCC ATTAGTTGAC AGTCCACCTC CAAGCAGCAG ACAGGACGGT
  K
  TGCAGGGGTG AAGCAGGAGG GAGGGATGGA GTGTTGGAAC GTCAGGGGAG GGTCTAATGA
  CCCCACACAC AGGGACTGGT ACAGGCACGA TTTTTTGAAG GCCTCCTGTA GATAATCGAA
  GCTGTTGGAA AGAAAGGGCC ACACAAGCCC AGGGAACAGA ATTCCACGCC ACACAGATCT
  TCTCTGTGGG TTGGGCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147553236	ENSMUSSNP421260	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321353456	CHEV_4_135452008	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51646446					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623404 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	689 bp distal
Rr602184	regulatory region 602184	395 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	779 bp proximal
Rr602187	regulatory region 602187	902 bp proximal
Rr602188	regulatory region 602188	930 bp proximal
Tssr39650	transcription start site region 39650	898 bp downstream
Tssr39651	transcription start site region 39651	697 bp downstream
Tssr39652	transcription start site region 39652	617 bp downstream