rs51643890 SNP Detail

Summary

• ID
  rs51643890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141856043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATC ACAGTATCTG AGTTCTCTGG
  R
  ATCATCTTGC CACTGAAAGC AAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147749396	ENSMUSSNP3094501	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss321392955	CHEV_4_141684647	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51643890					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141856043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35581	predicted gene, 35581			538 bp downstream
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604000	regulatory region 604000			1521 bp distal
Rr604001	regulatory region 604001			1027 bp distal
Rr604002	regulatory region 604002			1430 bp proximal