rs51641285 SNP Detail

Summary

• ID
  rs51641285
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13153318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTAAGCA CTATGCCCAG
  GCTTAGGTTT TAAATGGAAA AAGCACATGA CAACTGGCCT TAAGGTCCAC TAAAGGCGCA
  CAGGTCTTAC TTGCAGTTCA ATTAATAAAT GCTGAGAAAA CACACGGGGG AAACTACATA
  GGGAGCCTCA TGGATCCATT AACTGAACAC TTGTTGGCTA TGTGGACCAG CTCAGTATGC
  W
  CTCAGATCCC CAGATTTTCT CTTTATATGT GAACCTTCAT TAGAGTAGTC TAGTTCCTAA
  GTGTTGATCA CAAATTTTAT CTTGTTTAAC TCACACATTG CTGACTTGGT GTTTCTTAAG
  AGTAAATATT TAAACTTGGC AACAAACCAT ACCTACCAAA TATAGTAATC ACTGAAAAAT
  ACAAAACCAA ATACAGACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60864607	NES15985718	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A	A	T	T	T		T	T		T
ss321747189	CHEV_6_13103319	CHEVERUD	SCREENING_POP	f	SNP											T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51641285					SNP	T	T	T	A	T	A	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864607	NES15985718	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13153318 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	767 bp distal
Rr626557	regulatory region 626557	853 bp distal