rs51627993 SNP Detail

Summary

• ID
  rs51627993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36120088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGCAAA AGTATAACAA
  GAAAGAACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACTTAC
  TTCCTAGCCT GTTCGGATGA ATTTTAAAAA ACTACAATTT CTAAATTACA TACTCAGACA
  TTACATACAG CAATGCTTGG CGTAGGAGAC ATTTATTAAA CATATTCTGG AACGACCTGT
  Y
  CAATAGCCTC GCTCAAGGCG GCGCAGCCCT TGCGTCATCA GGAAGTGCGA GCTAGCTTCC
  GGTTGCAGCG GTGCAGGGTG AGACTTTGGA TGCCCGGACG CGGGTGATTG GCGTCATTGG
  GAGGAGCGGC GGGGCTTCCA GCGACTTGAA GTCTGAAGTC AGGAGCAGCA TGTCTGGCTG
  TGTGCTGCTC TCGCGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60387998	NES15892822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51627993					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60387998	NES15892822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36120088 () rs orientation: forward

Symbol	Name	Function Class
Acad9	acyl-Coenzyme A dehydrogenase family, member 9	40 bp upstream
Cpgi13079	CpG island 13079	within coordinates
Rr397642	regulatory region 397642	1092 bp downstream
Rr575304	regulatory region 575304	877 bp distal
Rr575305	regulatory region 575305	737 bp distal
Rr575306	regulatory region 575306	557 bp distal
Rr575307	regulatory region 575307	within coordinates
Tssr28859	transcription start site region 28859	45 bp upstream
Tssr28860	transcription start site region 28860	107 bp upstream
Tssr28861	transcription start site region 28861	125 bp upstream
Tssr28862	transcription start site region 28862	172 bp upstream