rs51625253 SNP Detail

Summary

• ID
  rs51625253
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153470857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTTCTG TATGTCTGAA
  GACAGCTACA GTGCATATAT ATATTTAAAA AAAAACGAGA GAGAGAGCCA GGTGGTGGTG
  GCGCACGCCT TTAATCCCAG CACTCGGGAG GCAGAGGCAG GCGGATTTCT GAGTTTGAGG
  CCAGCTTGGT CTACAGAGTG AGTTCCAGGA CAGCCAGGGC TATACAGAGA AACCCTGTCT
  C
  GAAACACCTC CCTCCCCCTC CCCCCCCAAA AAAAAATTAA GCAGGTTTAT TTTATGTGCC
  TGAGTATTCT GCTTGCATGT GTGTGTCATG GGATCTGTGG AACAGAAATG GCAGAGGGTT
  GTGAGGTGCC ACGTGGGTTC TAGGAACTGA ACCTGAGTCC TTTGTAAGAG CAGGCAGTGA
  CCAGACATTC TCTAAGTTGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147999314	ENSMUSSNP5987818	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs51625253					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153470857 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Rr567709	regulatory region 567709			1498 bp proximal